miRNEST 2.0, an integrative microRNA resource :: Browse
Home
Browse miRNAs
Deep-seq predictions
Mirtrons
miRNA genes
Degradomes
Download
Upload
Contact
Species belonging to selected taxon:
Theobroma cacao
ABOUT THIS RECORD
ID:
MNEST041115
species:
Theobroma cacao
source:
miRBase, original name:
tcc-MIR169n
(
MI0017488
)
Taxonomy by NCBI:
Theobroma cacao
Theobroma
Byttnerioideae
Malvaceae
Malvales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGAGTCAAGAATGACTTGCCG
miRNA*
GCAAGTTGTTCTTGGCTCACC
mismatches:
2
bulges:
0
View larger
pre-miRNA
AAAGGGAGGGAGTGGGGGCT
TGAGTCAAGAATGACTTGCCG
GTGTTTGCTTCTTGGCAGGCATTAATTAAGCCGGCTCACCGGCCTTAACCTAGTCCTCC
G
GCAAGTTGTTCTTGGCTCACC
TTCGCTCTCTTTTCTTTCAT
dot-bracket secondary structure
((((..((((((((((((..
(((((((((((..((((((((
(.(((((((....))))))).....(((((((((....)))).))))).........))
)
))))))..)))))))))))))
))))))).)))..))))...
SIMILARITIES
miRBase
ptc-MIR169z
:
0.0004
PMRD
ptc-miRf10669-akr
:
0.0004
microPC
no hits
UniProt
no hits
RFAM
no hits
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
references
[
1
] Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sal,
Nat Genet. 43:101-108(2011).
,
"The genome of Theobroma cacao"